bioimagetools - Tools for Microscopy Imaging
Tools for 3D imaging, mostly for biology/microscopy. Read and write TIFF stacks. Functions for segmentation, filtering and analyzing 3D point patterns.
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biologymicroscopy
5.61 score 4 stars 1 dependents 34 scripts 278 downloadsnucim - Nucleome Imaging Toolbox
Tools for 4D nucleome imaging. Quantitative analysis of the 3D nuclear landscape recorded with super-resolved fluorescence microscopy. See Volker J. Schmid, Marion Cremer, Thomas Cremer (2017) <doi:10.1016/j.ymeth.2017.03.013>.
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4.48 score 2 stars 7 scripts 459 downloadscmR - Analysis of Cardiac Magnetic Resonance Images
Computes maximum response from Cardiac Magnetic Resonance Images using spatial and voxel wise spline based Bayesian model. This is an implementation of the methods described in Schmid (2011) <doi:10.1109/TMI.2011.2109733> "Voxel-Based Adaptive Spatio-Temporal Modelling of Perfusion Cardiovascular MRI". IEEE TMI 30(7) p. 1305 - 1313.
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4.00 score 2 stars 9 scripts 245 downloads