bioimagetools - Tools for Microscopy Imaging
Tools for 3D imaging, mostly for biology/microscopy. Read and write TIFF stacks. Functions for segmentation, filtering and analyzing 3D point patterns.
Last updated 3 years ago
biologymicroscopy
5.30 score 4 stars 1 dependents 33 scripts 314 downloadsnucim - Nucleome Imaging Toolbox
Tools for 4D nucleome imaging. Quantitative analysis of the 3D nuclear landscape recorded with super-resolved fluorescence microscopy. See Volker J. Schmid, Marion Cremer, Thomas Cremer (2017) <doi:10.1016/j.ymeth.2017.03.013>.
Last updated 2 years ago
4.48 score 2 stars 7 scripts 166 downloadscmR - Analysis of Cardiac Magnetic Resonance Images
Computes maximum response from Cardiac Magnetic Resonance Images using spatial and voxel wise spline based Bayesian model. This is an implementation of the methods described in Schmid (2011) <doi:10.1109/TMI.2011.2109733> "Voxel-Based Adaptive Spatio-Temporal Modelling of Perfusion Cardiovascular MRI". IEEE TMI 30(7) p. 1305 - 1313.
Last updated 2 years ago
4.00 score 2 stars 9 scripts 261 downloads